Search variation by region

 Variant Type:
 > Select from 1094 Gh. and 77 Gb. 13 others
 Allele Frequency:


Useage & attention

  • select one chromosome from 26 chomosomes (A01-A13,D01-D13) and the location (from start to end). Scaffolds were not included in this.
  • you can filter SNPs/InDels loci based on the variant type, annotation, population and allele frequency.
  • All the Varition results was identified by fastqc(QC),sickle(Trim), bwa(Map to reference TM-1_V2.1), samtools, Sambamba/picard(Duplicates Marking),bctools/GATK(variation calling).