Notice:
The Hai7124 (v1.1) genome was aligned with the TM-1 (v2.1) genome by MUMmer (version 3.23; http://mummer.sourceforge.net/) with parameters ‘-maxmatch 90 -l 40’, and one-to-one genomic alignment results were extracted with the ‘delta-filter -1’ parameter. SNPs and indels were identified by show-snp from the one-to-one alignment blocks (parameter ‘-ClrTH’)
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