cotton genome variations database

Data release Last Update: 2026-09-15

TM-1 Sequence Data Release
TM-1_V2.1.fa.gz
TM-1_V2.1.gene.cds.fa.gz
TM-1_V2.1.gene.gff.gz
TM-1_V2.1.gene.pep.fa.gz
T2T genome of TM-1
TM-1-T2T.zip
Hai7124 Sequence Data Release
Hai7124_V1.1.fa.gz
Hai7124_V1.1.gene.cds.fa.gz
Hai7124_V1.1.gene.gff.gz
Hai7124_V1.1.gene.pep.fa.gz
Variantion Annotation
TM-1_V2.1_Hai7124_V1.1.InDel.gff.gz
TM-1_V2.1_Hai7124_V1.1.SNP.gff.gz
TM-1_V2.1_Hai7124_V1.1.SV.gff.gz
Gene Annotation
TM-1_v2.1_final.annotation
Hai7124_final.annotation
TM-1 T2T annotation
Raw data Summary
ReSeq data summary
RNA-Seq and Mirna-seq data summary
Gossypium barbadense ReSeq Data Release
Gossypium barbadense ReSeq Phenotype download
Gossypium barbadense ReSeq vcf download
Please Cite https://doi.org/10.1111/pbi.13547
Comparison between different versions of TM1
Id conversion source
Tanguis Sequence Data Release
Tanguis chromesome assembly
HPF17 Sequence Data Release
HPF17 chromesome assembly fasta
HPF17 chromesome assembly annotation GFF
HPF17 chromesome assembly CDS
HPF17 chromesome assembly protein
HPF17 chromesome assembly gene function annotation
Cotton fiber 10x matrix Data Release
Cotton fiber 10x matrix file
Genome of B. ceiba and C. pentandra
B. ceiba
C. pentandra
0-613-2R Sequence data release
0-613-2R_Genome
Genome of CRI12/J8891
CRI12.fa
J8891.V3.fa
Genome of F. hainanensis
F. hainanensis
T2T genome of A. esculentus
T2T genome of A. esculentus
The download link will be made publicly available after the paper is published.